{"id":116985,"date":"2009-04-23T14:13:00","date_gmt":"2009-04-23T14:13:00","guid":{"rendered":"http:\/\/weblogs.madrimasd.org\/\/bioinformatica\/archive\/2009\/04\/23\/116985.aspx"},"modified":"2009-04-23T14:13:00","modified_gmt":"2009-04-23T14:13:00","slug":"ensembl-se-extiende-por-el-arbol-taxonomico","status":"publish","type":"post","link":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/2009\/04\/23\/116985","title":{"rendered":"Ensembl se \u00abextiende\u00bb por el \u00e1rbol taxon\u00f3mico"},"content":{"rendered":"

Hace unos d\u00edas mi amigo Javito me mand\u00f3 desde el EBI<\/a> el anuncio de la aparici\u00f3n de versiones especializadas de Ensembl<\/a> en no vertebrados. Ensembl es el principal centro de integraci\u00f3n de informaci\u00f3n gen\u00f3mica de organismos, y hasta hace relativamente poco estaba principalmente centrado en mam\u00edferos. Desde entonces se ha ido generalizando a otros tipos de vertebrados (como el gallo<\/a>) u organismos eucariotas (como C. Elegans<\/a> o la mosca de la fruta<\/a>), albergando a d\u00eda de hoy informaci\u00f3n detallada de m\u00e1s de 50 organismos.<\/p>\n

<\/a><\/div>\n

En esta nueva versi\u00f3n de Ensembl va a haber sitios extendidos especializados en no-vertebrados de las ramas taxon\u00f3micas de las bacterias (http:\/\/bacteria.ensembl.org\/<\/a>), protistas (http:\/\/protists.ensembl.org\/<\/a>) y metazoos (http:\/\/metazoa.ensembl.org\/<\/a>). Adem\u00e1s, a lo largo del verano aparecer\u00e1n sitios especializados para hongos y plantas. Tambi\u00e9n la versi\u00f3n est\u00e1ndar de Ensembl sufre una mejora, a trav\u00e9s de la web de Ensembl Genomes<\/a> (http:\/\/www.ensemblgenomes.org\/<\/a>), cuya informaci\u00f3n estar\u00e1 coordinada con todas las webs de Ensembl, permitiendo an\u00e1lisis comparativos multigen\u00f3micos.<\/p>\n

El anuncio original viene a continuaci\u00f3n:
<\/p>\n

We are delighted to announce the forthcoming release of Ensembl 
Bacteria, Ensembl Protists and Ensembl Metazoa, the first sites to be 
launched as part of the EBI's \"Ensembl Genomes\" project to extend the 
use of the Ensembl browser to non-vertebrate genomes.

These following site are available:

http:\/\/bacteria.ensembl.org<\/a>
http:\/\/protists.ensembl.org<\/a>
http:\/\/metazoa.ensembl.org<\/a>

Additional sites for fungi and plants are in development and will be 
launched during the summer of this year.

In the Ensembl Genomes project, we are aiming to do two things: firstly 
to work with particular communities to support the bioinformatic 
analysis of genome-scale data; and secondly, to provide an integrative 
portal to data from species of scientific interest from across the 
taxonomic space.  In pursuit of both these aims, we will re-use and 
extend the proven Ensembl software system, that has been developed by 
EBI and the Wellcome Trust Sanger Institute in the context of vertebrate 
genomics.

As with Ensembl, Ensembl Genomes will provide access to DNA and protein 
sequence, positional and functional annotation of protein-coding and 
non-protein coding genes, repeat analysis and other features and 
statistics.  An interesting feature made available with the release of  
Ensembl Genomes is the inclusion of a multi-way comparative genomic 
analysis performed using a selection of species from bacteria to humans, 
and the production of gene trees showing the inferred ancestral 
relationships within deeply conserved protein families.  Comparative 
resources are also provided at a narrower level (for example, DNA and 
protein-based analyses of individual bacterial clades).  In partnership 
with collaborators, we are working on capturing gene expression, and 
population-scale variation data, in a number of contexts.  More 
generally, we anticipate the ongoing enrichment of these resources 
through the integration of increasing quantities of high throughput data 
now becoming routinely available for all species.

Ensembl Genomes will provide access to data through the usual routes 
supported for vertebrate data; web-based browser, FTP site, programmatic 
API, DAS, and BioMart-style data warehouse; as well as text and 
sequence-based search.

We look forward to working with you as future producers and consumers of 
data.  More information about the project is available at 
http:\/\/www.ensemblgenomes.org<\/a>.  We will be happy to receive any feedback 
you might wish to offer us at helpdesk@ensemblgenomes.org<\/a>.

------------------------------------------------------------------
Dr. Paul Kersey
Team Leader, PANDA Dataflow
EMBL-European Bioinformatics Institute    Tel: +44-(0)1223-494601
Wellcome Trust Genome Campus, Hinxton     Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK                    
<\/pre>\n","protected":false},"excerpt":{"rendered":"
Hace unos d\u00edas mi amigo Javito me mand\u00f3 desde el EBI el anuncio de la aparici\u00f3n de versiones especializadas de Ensembl en no vertebrados. Ensembl es el principal centro de integraci\u00f3n de informaci\u00f3n gen\u00f3mica de organismos, y hasta hace relativamente poco estaba principalmente centrado en mam\u00edferos. Desde entonces se ha ido generalizando a otros tipos de vertebrados (como el gallo) u organismos eucariotas (como C. Elegans o la mosca de la fruta), albergando a d\u00eda de hoy informaci\u00f3n detallada de m\u00e1s de 50 organismos. En esta nueva versi\u00f3n de Ensembl va a haber sitios extendidos especializados en no-vertebrados de las\u2026<\/p>\n","protected":false},"author":25,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"ngg_post_thumbnail":0},"categories":[31,189],"tags":[],"blocksy_meta":{"styles_descriptor":{"styles":{"desktop":"","tablet":"","mobile":""},"google_fonts":[],"version":4}},"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/posts\/116985"}],"collection":[{"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/users\/25"}],"replies":[{"embeddable":true,"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/comments?post=116985"}],"version-history":[{"count":0,"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/posts\/116985\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/media?parent=116985"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/categories?post=116985"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.madrimasd.org\/blogs\/bioinformatica\/wp-json\/wp\/v2\/tags?post=116985"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}